Notice: On April 23, 2014, Statalist moved from an email list to a forum, based at statalist.org.
[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
Re: st: Manhattan Plots in Stata (Genetics)
From
Phil Schumm <[email protected]>
To
[email protected]
Subject
Re: st: Manhattan Plots in Stata (Genetics)
Date
Thu, 22 Sep 2011 12:33:26 -0500
On Sep 22, 2011, at 11:43 AM, Cook, Daniel E wrote:
> I should also note that I haven't created any examples because I do not have a GWAS dataset that I am allowed to distribute.
You can try the example dataset used in the plink manual:
http://pngu.mgh.harvard.edu/~purcell/plink/
I believe the author (Shaun Purcell) has said those data may be redistributed, as long as you give him credit (make sure to double-check).
Summary data (i.e., p-values) for two recent GWAS meta-analyses in Crohn's disease and ulcerative colitis are available for download here:
http://medicine.yale.edu/intmed/ibdgc/resources/data.aspx
Finally,
http://www.gwascentral.org/index
should provide a rich source of possible examples.
-- Phil
*
* For searches and help try:
* http://www.stata.com/help.cgi?search
* http://www.stata.com/support/statalist/faq
* http://www.ats.ucla.edu/stat/stata/