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st: fishers exact test


From   [email protected]
To   [email protected]
Subject   st: fishers exact test
Date   Tue, 28 Feb 2006 11:18:56 -0600



Hello,

I have a 2x2 table:

first row:               41   12
second row:         6      1

Running tabi gives a p-value for Fisher's exact test of 1.0 (two sided) and
0.52 (one sided).  The hypothesis suggests using two sided value.

A reviewer commented that p-values, unless the data is quite unique, should
not be 1.0

Why is the p-value for Fisher's exact test exactly 1.0?  Does this make
sense?
Moreover, after viewing "return list," the p-value isn't 1.0 but
1.00000000012.  How can a p-value exceed 1.0?

Also, looking on the web, some sites calculate the following:

Two sided p-values for p(O>=E|O<=E)
  p-value= 1.0000000000* (the sum of small p's)
Two sided p-value for p(O>E|O<E)
  p-value= 0.6385656450 (the sum of small p's)

Should I be using a different test?

Thank you,
Richard Lenhardt

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